Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens phakopsora pachyrhizi and p. meibomiae.
Identifieur interne : 000D61 ( Main/Exploration ); précédent : 000D60; suivant : 000D62Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens phakopsora pachyrhizi and p. meibomiae.
Auteurs : Christine L. Stone [États-Unis] ; Martha Lucia Posada Buitrago ; Jeffrey L. Boore ; Reid D. FrederickSource :
- Mycologia [ 0027-5514 ]
Descripteurs français
- KwdFr :
- MESH :
- composition chimique : ADN mitochondrial, Basidiomycota.
- génétique : ARN de transfert, Basidiomycota.
- microbiologie : Soja.
- Codon, Données de séquences moléculaires, Phylogenèse, Séquence nucléotidique.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : DNA, Mitochondrial.
- chemical , genetics : RNA, Transfer.
- chemical : Codon.
- classification : Basidiomycota.
- genetics : Basidiomycota.
- microbiology : Soybeans.
- Base Sequence, Molecular Sequence Data, Phylogeny.
Abstract
The mitochondrial (mt) genomes of two soybean rust pathogens, Phakopsora pachyrhizi and P. meibomiae, have been sequenced. The mt genome of P. pachyrhizi is a circular 31 825-bp molecule with a mean GC content of 34.6%, while P. meibomiae possesses a 32 520-bp circular molecule with a mean GC content of 34.9%. Both mt genomes contain the genes encoding ATP synthase subunits 6, 8 and 9 (atp6, atp8 and atp9), cytochrome oxidase subunits I, II and III (cox1, cox2 and cox3), apocytochrome b (cob), reduced nicotinamide adenine dinucleotide ubiquinone oxidoreductase subunits (nad1, nad2, nad3, nad4, nad4L, nad5 and nad6), the large and small mt ribosomal RNA genes, one ORF coding for a ribosomal protein (rps3), and a set of 24 tRNA genes that recognize codons for all amino acids. The order of the protein-coding genes and tRNA is identical in the two Phakopsora species, and all genes are transcribed from the same DNA strand clockwise. Introns were identified in the cox1, cob and mnl genes of both species, with three of the introns having ORFs with motifs similar to the LAGLIDADG endonucleases of other fungi. Phylogenetic analysis of the 14 shared protein-coding genes agrees with commonly accepted fungal taxonomy.
DOI: 10.3852/09-198
PubMed: 20648755
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Stone</name><affiliation wicri:level="1"><nlm:affiliation>USDA-Agricultural Research Service, Foreign DiseaseWeed Science Research Unit, 1301 Ditto Avenue, Fort Detrick, Maryland 21702, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA-Agricultural Research Service, Foreign DiseaseWeed Science Research Unit, 1301 Ditto Avenue, Fort Detrick, Maryland 21702</wicri:regionArea><wicri:noRegion>Maryland 21702</wicri:noRegion></affiliation></author><author><name sortKey="Buitrago, Martha Lucia Posada" sort="Buitrago, Martha Lucia Posada" uniqKey="Buitrago M" first="Martha Lucia Posada" last="Buitrago">Martha Lucia Posada Buitrago</name></author><author><name sortKey="Boore, Jeffrey L" sort="Boore, Jeffrey L" uniqKey="Boore J" first="Jeffrey L" last="Boore">Jeffrey L. Boore</name></author><author><name sortKey="Frederick, Reid D" sort="Frederick, Reid D" uniqKey="Frederick R" first="Reid D" last="Frederick">Reid D. Frederick</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2010">2010 Jul-Aug</date><idno type="RBID">pubmed:20648755</idno><idno type="pmid">20648755</idno><idno type="doi">10.3852/09-198</idno><idno type="wicri:Area/Main/Corpus">000D82</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000D82</idno><idno type="wicri:Area/Main/Curation">000D82</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000D82</idno><idno type="wicri:Area/Main/Exploration">000D82</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens phakopsora pachyrhizi and p. meibomiae.</title><author><name sortKey="Stone, Christine L" sort="Stone, Christine L" uniqKey="Stone C" first="Christine L" last="Stone">Christine L. 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The mt genome of P. pachyrhizi is a circular 31 825-bp molecule with a mean GC content of 34.6%, while P. meibomiae possesses a 32 520-bp circular molecule with a mean GC content of 34.9%. Both mt genomes contain the genes encoding ATP synthase subunits 6, 8 and 9 (atp6, atp8 and atp9), cytochrome oxidase subunits I, II and III (cox1, cox2 and cox3), apocytochrome b (cob), reduced nicotinamide adenine dinucleotide ubiquinone oxidoreductase subunits (nad1, nad2, nad3, nad4, nad4L, nad5 and nad6), the large and small mt ribosomal RNA genes, one ORF coding for a ribosomal protein (rps3), and a set of 24 tRNA genes that recognize codons for all amino acids. The order of the protein-coding genes and tRNA is identical in the two Phakopsora species, and all genes are transcribed from the same DNA strand clockwise. Introns were identified in the cox1, cob and mnl genes of both species, with three of the introns having ORFs with motifs similar to the LAGLIDADG endonucleases of other fungi. Phylogenetic analysis of the 14 shared protein-coding genes agrees with commonly accepted fungal taxonomy.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20648755</PMID><DateCompleted><Year>2010</Year><Month>08</Month><Day>17</Day></DateCompleted><DateRevised><Year>2019</Year><Month>11</Month><Day>11</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>102</Volume><Issue>4</Issue><PubDate><MedlineDate>2010 Jul-Aug</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens phakopsora pachyrhizi and p. meibomiae.</ArticleTitle><Pagination><MedlinePgn>887-97</MedlinePgn></Pagination><Abstract><AbstractText>The mitochondrial (mt) genomes of two soybean rust pathogens, Phakopsora pachyrhizi and P. meibomiae, have been sequenced. The mt genome of P. pachyrhizi is a circular 31 825-bp molecule with a mean GC content of 34.6%, while P. meibomiae possesses a 32 520-bp circular molecule with a mean GC content of 34.9%. Both mt genomes contain the genes encoding ATP synthase subunits 6, 8 and 9 (atp6, atp8 and atp9), cytochrome oxidase subunits I, II and III (cox1, cox2 and cox3), apocytochrome b (cob), reduced nicotinamide adenine dinucleotide ubiquinone oxidoreductase subunits (nad1, nad2, nad3, nad4, nad4L, nad5 and nad6), the large and small mt ribosomal RNA genes, one ORF coding for a ribosomal protein (rps3), and a set of 24 tRNA genes that recognize codons for all amino acids. The order of the protein-coding genes and tRNA is identical in the two Phakopsora species, and all genes are transcribed from the same DNA strand clockwise. Introns were identified in the cox1, cob and mnl genes of both species, with three of the introns having ORFs with motifs similar to the LAGLIDADG endonucleases of other fungi. Phylogenetic analysis of the 14 shared protein-coding genes agrees with commonly accepted fungal taxonomy.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Stone</LastName><ForeName>Christine L</ForeName><Initials>CL</Initials><AffiliationInfo><Affiliation>USDA-Agricultural Research Service, Foreign DiseaseWeed Science Research Unit, 1301 Ditto Avenue, Fort Detrick, Maryland 21702, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Buitrago</LastName><ForeName>Martha Lucia Posada</ForeName><Initials>ML</Initials></Author><Author ValidYN="Y"><LastName>Boore</LastName><ForeName>Jeffrey L</ForeName><Initials>JL</Initials></Author><Author ValidYN="Y"><LastName>Frederick</LastName><ForeName>Reid D</ForeName><Initials>RD</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D003062">Codon</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004272">DNA, Mitochondrial</NameOfSubstance></Chemical><Chemical><RegistryNumber>9014-25-9</RegistryNumber><NameOfSubstance UI="D012343">RNA, Transfer</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003062" MajorTopicYN="N">Codon</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004272" MajorTopicYN="N">DNA, Mitochondrial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012343" MajorTopicYN="N">RNA, Transfer</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013025" MajorTopicYN="N">Soybeans</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>7</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>7</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2010</Year><Month>8</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">20648755</ArticleId><ArticleId IdType="doi">10.3852/09-198</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><noCountry><name sortKey="Boore, Jeffrey L" sort="Boore, Jeffrey L" uniqKey="Boore J" first="Jeffrey L" last="Boore">Jeffrey L. Boore</name><name sortKey="Buitrago, Martha Lucia Posada" sort="Buitrago, Martha Lucia Posada" uniqKey="Buitrago M" first="Martha Lucia Posada" last="Buitrago">Martha Lucia Posada Buitrago</name><name sortKey="Frederick, Reid D" sort="Frederick, Reid D" uniqKey="Frederick R" first="Reid D" last="Frederick">Reid D. Frederick</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Stone, Christine L" sort="Stone, Christine L" uniqKey="Stone C" first="Christine L" last="Stone">Christine L. Stone</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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